1DP2

CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN RHODANESE AND LIPOATE

Structural Biology Knowledgebase: 1DP2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 1DP2

Classification: TRANSFERASE

Total Structure Weight: 33189.95

Macromolecule Entities
Molecule Chains Length Organism Details
RHODANESE A 293 Bos taurus EC#: 2.8.1.1 IUBMB
Gene Name(s): TST Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LPB
Query on LPB

A 5-[(3S)-1,2-dithiolan-3-yl]pentanoic acid
C8 H14 O2 S2
AGBQKNBQESQNJD-ZETCQYMHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSS
Query on CSS
A L-PEPTIDE LINKING C3 H7 N O2 S2 CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.170
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 154.36 α = 90.00
b = 49.31 β = 99.60
c = 41.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-12-23
  • Released Date: 2000-12-13
  • Deposition author(s): Zanotti, G., Cianci, M.

Revision History

  • 2011-10-05
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4