1DOT

CRYSTALLOGRAPHIC STRUCTURE OF DUCK OVOTRANSFERRIN AT 2.3 ANGSTROMS RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 1DOT

Classification: IRON TRANSPORT PROTEIN

Total Structure Weight: 76570.09

Macromolecule Entities
Molecule Chains Length Organism Details
DUCK OVOTRANSFERRIN A 686 Anas platyrhynchos Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

A ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO3
Query on CO3

A CARBONATE ION
C O3
BVKZGUZCCUSVTD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.230
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 49.60 α = 90.00
b = 85.60 β = 90.00
c = 178.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-08-03
  • Released Date: 1996-03-08
  • Deposition author(s): Rawas, A., Muirhead, H.

Revision History

  • Version 1_0: 1996-03-08

    Type: Initial release

  • Version 1_1: 2008-03-03

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Non-polymer description, Version format compliance