1DOA

Structure of the rho family gtp-binding protein cdc42 in complex with the multifunctional regulator rhogdi

Structural Biology Knowledgebase: 1DOA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.257

Literature

Macromolecules
Sequence Display for 1DOA

Classification: CELL CYCLE

Total Structure Weight: 46654.81

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (GTP-BINDING PROTEIN) A 191 Homo sapiens Mutation: C188X
Gene Name(s): CDC42 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (GDP-DISSOCIATION INHIBITOR 1) B 219 Bos taurus Gene Name(s): ARHGDIA Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GER
Query on GER

A GERAN-8-YL GERAN
C20 H34
HSOYJGBJQAKCNA-CAIKYXSQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CMT
Query on CMT
A L-PEPTIDE LINKING C4 H9 N O2 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.257
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 83.94 α = 90.00
b = 83.94 β = 90.00
c = 191.16 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-12-20
  • Released Date: 2000-02-09
  • Deposition author(s): Hoffman, G.R., Nassar, N., Cerione, R.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4