1DNF

EFFECTS OF 5-FLUOROURACIL/GUANINE WOBBLE BASE PAIRS IN Z-DNA. MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGFG)

Structural Biology Knowledgebase: 1DNF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.172

Literature

Macromolecules
Sequence Display for 1DNF

Classification: DNA

Total Structure Weight: 3682.70

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*CP*GP*(UFP)P*G)-3') A, B 6 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UFP
Query on UFP
A, B DNA LINKING C9 H12 F N2 O8 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.172
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 17.36 α = 90.00
b = 31.15 β = 90.00
c = 45.40 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1988-12-12
  • Released Date: 1990-10-15
  • Deposition author(s): Coll, M., Saal, D., Frederick, C.A., Aymami, J., Rich, A., Wang, A.H.-J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4