1DMR

OXIDIZED DMSO REDUCTASE FROM RHODOBACTER CAPSULATUS

Structural Biology Knowledgebase: 1DMR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.147

Literature

Macromolecules
Sequence Display for 1DMR

Classification: OXIDOREDUCTASE

Total Structure Weight: 91130.67

Macromolecule Entities
Molecule Chains Length Organism Details
DMSO REDUCTASE A 823 Rhodobacter capsulatus EC#: 1.7.2.3 IUBMB 1.8.5.3 IUBMB
Mutation: T39S, E43A, Q107E, D234E, V236I, M280D, S294E, D295G, I312E, S374A, I456V, K526A, G552A, E555Q
Gene Name(s): dorA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGD
Query on PGD

A 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9- TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN- 4-ONE GUANOSINE DINUCLEOTIDE
C20 H24 N10 O13 P2 S2
SOFMTHSWCZNJTQ-ILXWUORBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
6MO
Query on 6MO

A MOLYBDENUM(VI) ION
Mo
HCNGUXXTNNIKCQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
O
Query on O

A OXYGEN ATOM
O
XLYOFNOQVPJJNP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.147
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 80.88 α = 90.00
b = 80.88 β = 90.00
c = 229.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-04-22
  • Released Date: 1998-03-18
  • Deposition author(s): Mcalpine, A.S., Bailey, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4