1DMH

STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER SP. ADP1 WITH BOUND 4-METHYLCATECHOL

Structural Biology Knowledgebase: 1DMH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 1DMH

Classification: OXIDOREDUCTASE

Total Structure Weight: 70402.68

Macromolecule Entities
Molecule Chains Length Organism Details
CATECHOL 1,2-DIOXYGENASE A, B 311 Acinetobacter sp. adp1 EC#: 1.13.11.1 IUBMB
Gene Name(s): catA ACIAD1442
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LIO
Query on LIO

A, B [1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE
C33 H67 N O8 P
YAOVLDDMIGILIT-WJOKGBTCSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MCT
Query on MCT

A, B 4-METHYLCATECHOL
4-METHYL-1,2-BENZENEDIOL (Synonym)
C7 H8 O2
ZBCATMYQYDCTIZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A, B FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.185
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.80 α = 90.00
b = 88.00 β = 96.30
c = 84.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-12-14
  • Released Date: 2000-05-23
  • Deposition author(s): Vetting, M.W., Ohlendorf, D.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name