1DL7

THE STRUCTURAL BASIS OF REPERTOIRE SHIFT IN AN IMMUNE RESPONSE TO PHOSPHOCHOLINE

Structural Biology Knowledgebase: 1DL7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 1DL7

Classification: IMMUNE SYSTEM

Total Structure Weight: 24184.13

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (ANTIBODY M3C65 (LIGHT CHAIN)) L 109 Mus musculus Fragment: FV (SINGLE CHAIN)
Details: COMBINED LIGHT AND HEAVY CHAIN VIA (G4S)3 LINKER
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (ANTIBODY M3C65 (HEAVY CHAIN)) H 112 Mus musculus Fragment: FV (SINGLE CHAIN)
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NCH
Query on NCH

L P-NITROPHENYL-PHOSPHOCHOLINE
C11 H18 N2 O6 P
NAIXASFEPQPICN-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NCH N/A in BindingDB
Kd: 320 nM  BindingMOAD
Kd: 320 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.189
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 130.90 α = 90.00
b = 35.90 β = 90.00
c = 50.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-12-08
  • Released Date: 2000-12-13
  • Deposition author(s): Schumacher, M., Brown, M.

Revision History

  • 2013-10-02
    Type: Source and taxonomy | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4