1DL5

PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE

Structural Biology Knowledgebase: 1DL5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 1DL5

Classification: TRANSFERASE

Total Structure Weight: 75017.38

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE A, B 317 Thermotoga maritima EC#: 2.1.1.77 IUBMB
Gene Name(s): pcm TM_0704
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A, B S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.182
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 51.06 α = 90.00
b = 98.91 β = 105.66
c = 76.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-12-08
  • Released Date: 2000-12-08
  • Deposition author(s): Skinner, M.M., Puvathingal, J.M., Walter, R.L., Friedman, A.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4