1DKK

BOBWHITE QUAIL LYSOZYME WITH NITRATE

Structural Biology Knowledgebase: 1DKK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Work: 0.157

Literature

Macromolecules
Sequence Display for 1DKK

Classification: HYDROLASE (O-GLYCOSYL)

Total Structure Weight: 28826.42

Macromolecule Entities
Molecule Chains Length Organism Details
LYSOZYME A, B 129 Colinus virginianus EC#: 3.2.1.17 IUBMB
Gene Name(s): LYZ Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NO3
Query on NO3

A, B NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed:
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 28.00 α = 90.00
b = 62.60 β = 91.60
c = 60.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-01-10
  • Released Date: 1996-07-11
  • Deposition author(s): Jeffrey, P.D., Sheriff, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4