1DJY

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH INOSITOL-2,4,5-TRISPHOSPHATE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.210

Literature

Macromolecules
Sequence Display for 1DJY

Classification: LIPID DEGRADATION

Total Structure Weight: 142347.78

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 A, B 624 Rattus norvegicus EC#: 3.1.4.11 IUBMB
Details: CATALYTICALLY-ACTIVE DELETION VARIANT THAT LACKS AN N-TERMINAL PH DOMAIN, COMPLEXED WITH INOSITOL-2,4,5-TRISPHOSPHATE
Gene Name(s): Plcd1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
I2P
Query on I2P

A, B D-MYO-INOSITOL-2,4,5-TRIPHOSPHATE
4, (Synonym)
C6 H15 O15 P3
MMWCIQZXVOZEGG-LKPKBOIGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A, B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.210
  • Space Group: F 41 3 2

Unit Cell:

Length (Å) Angle (°)
a = 397.13 α = 90.00
b = 397.13 β = 90.00
c = 397.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-08-24
  • Released Date: 1997-07-07
  • Deposition author(s): Essen, L.-O., Perisic, O., Williams, R.L.

Revision History

  • Version 1_0: 1997-07-07

    Type: Initial release

  • Version 1_1: 2008-03-24

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance