1DHJ

LONG-RANGE STRUCTURAL EFFECTS IN A SECOND-SITE REVERTANT OF A MUTANT DIHYDROFOLATE REDUCTASE

Structural Biology Knowledgebase: 1DHJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.167

Literature

Macromolecules
Sequence Display for 1DHJ

Classification: OXIDOREDUCTASE

Total Structure Weight: 36884.61

Macromolecule Entities
Molecule Chains Length Organism Details
DIHYDROFOLATE REDUCTASE A, B 159 Escherichia coli EC#: 1.5.1.3 IUBMB
Mutation: D27S, N37D, F137S
Gene Name(s): folA tmrA b0048 JW0047
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MTX
Query on MTX

A, B METHOTREXATE
C20 H22 N8 O5
FBOZXECLQNJBKD-ZDUSSCGKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MTX EC50: 1 nM (98) BindingDB
IC50: 3 - 4400 nM (98) BindingDB
Kd: <1 nM (98) BindingDB

Kd: 281 nM  BindingMOAD
Kd: 281 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.167
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 92.49 α = 90.00
b = 92.49 β = 90.00
c = 73.72 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1993-10-29
  • Released Date: 1994-01-31
  • Deposition author(s): Brown, K.A., Kraut, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4