1DE5

L-RHAMNOSE ISOMERASE

Structural Biology Knowledgebase: 1DE5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.156

Literature

Macromolecules
Sequence Display for 1DE5

Classification: ISOMERASE

Total Structure Weight: 193609.50

Macromolecule Entities
Molecule Chains Length Organism Details
L-RHAMNOSE ISOMERASE A, B, C, D 426 Escherichia coli EC#: 5.3.1.14 IUBMB
Gene Name(s): rhaA b3903 JW5561
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RNT
Query on RNT

A, B, C, D L-RHAMNITOL
C6 H14 O5
SKCKOFZKJLZSFA-BXKVDMCESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.156
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 169.44 α = 90.00
b = 162.69 β = 110.68
c = 77.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-11-12
  • Released Date: 2000-08-09
  • Deposition author(s): Korndorfer, I.P., Fessner, W.D., Matthews, B.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4