1DE4

HEMOCHROMATOSIS PROTEIN HFE COMPLEXED WITH TRANSFERRIN RECEPTOR

Structural Biology Knowledgebase: 1DE4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 1DE4

Classification: METAL TRANSPORT INHIBITOR / RECEPTOR

Total Structure Weight: 348563.84

Macromolecule Entities
Molecule Chains Length Organism Details
HEMOCHROMATOSIS PROTEIN A, D, G 275 Homo sapiens Fragment: ECTODOMAIN
Gene Name(s): HFE Gene View HLAH
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BETA-2-MICROGLOBULIN B, E, H 99 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
TRANSFERRIN RECEPTOR C, F, I 640 Homo sapiens Fragment: ECTODOMAIN
Gene Name(s): TFRC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

C, F, I N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

G GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

C, F, I CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.231
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 110.40 α = 90.00
b = 144.40 β = 93.60
c = 327.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-11-12
  • Released Date: 2000-01-19
  • Deposition author(s): Bennett, M.J., Lebron, J.A., Bjorkman, P.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update