1DDL

DESMODIUM YELLOW MOTTLE TYMOVIRUS

Structural Biology Knowledgebase: 1DDL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.159
  • R-Value Work: 0.151

Literature

Macromolecules
Sequence Display for 1DDL

Classification: Virus / RNA [ VIPERdb ]

Total Structure Weight: 313506.38


Macromolecule Entities
Molecule Chains Length Organism Details
DESMODIUM YELLOW MOTTLE VIRUS A, B, C 188 Desmodium yellow mottle virus Fragment: VIRAL COAT PROTEIN
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') D 7 synthetic
RNA (5'-R(P*UP*U)-3') E 2 synthetic


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.159
  • R-Value Work: 0.151
  • Space Group: P 42 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 348.55 α = 90.00
b = 348.55 β = 90.00
c = 348.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-11-10
  • Released Date: 2000-10-30
  • Deposition author(s): Larson, S.B., Day, J., Canady, M.A., Greenwood, A., McPherson, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4