1DDE

STRUCTURE OF THE DNAG CATALYTIC CORE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1DDE

Classification: TRANSFERASE

Total Structure Weight: 38577.88

Macromolecule Entities
Molecule Chains Length Organism Details
DNA PRIMASE A 338 Escherichia coli EC#: 2.7.7 IUBMB
Fragment: 36 KDA CATALYTIC CORE DOMAIN
Gene Name(s): dnaG dnaP parB b3066 JW3038
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
Y1
Query on Y1

A YTTRIUM ION
Y
KAJPZYFHSCFBCI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.209
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 38.02 α = 90.00
b = 55.89 β = 90.00
c = 139.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-11-09
  • Released Date: 2000-04-07
  • Deposition author(s): Keck, J.L., Roche, D.D., Lynch, A.S., Berger, J.M.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance