1DAP

C. GLUTAMICUM DAP DEHYDROGENASE IN COMPLEX WITH NADP+

Structural Biology Knowledgebase: 1DAP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 1DAP

Classification: OXIDOREDUCTASE

Total Structure Weight: 72094.23

Macromolecule Entities
Molecule Chains Length Organism Details
DIAMINOPIMELIC ACID DEHYDROGENASE A, B 320 Corynebacterium glutamicum EC#: 1.4.1.16 IUBMB
Gene Name(s): ddh Cgl2617 cg2900
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed:
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 75.90 α = 90.00
b = 65.80 β = 106.60
c = 84.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-07-08
  • Released Date: 1997-07-07
  • Deposition author(s): Scapin, G., Reddy, S.G., Blanchard, J.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4