1DAA

CRYSTALLOGRAPHIC STRUCTURE OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAL-5'-PHOSPHATE

Structural Biology Knowledgebase: 1DAA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Observed: 0.184

Literature

Macromolecules
Sequence Display for 1DAA

Classification: TRANSFERASE (AMINOTRANSFERASE)

Total Structure Weight: 65118.66

Macromolecule Entities
Molecule Chains Length Organism Details
D-AMINO ACID AMINOTRANSFERASE A, B 282 Bacillus sp. ym-1 EC#: 2.6.1.21 IUBMB
Gene Name(s): dat
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Observed: 0.184
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 58.50 α = 90.00
b = 76.20 β = 103.90
c = 73.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-06-09
  • Released Date: 1995-09-15
  • Deposition author(s): Sugio, S., Peisach, D., Ringe, D.

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4