1D9Z

CRYSTAL STRUCTURE OF THE DNA REPAIR PROTEIN UVRB IN COMPLEX WITH ATP

Structural Biology Knowledgebase: 1D9Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.335
  • R-Value Work: 0.262

Literature

Macromolecules
Sequence Display for 1D9Z

Classification: GENE REGULATION

Total Structure Weight: 76092.86

Macromolecule Entities
Molecule Chains Length Organism Details
EXCINUCLEASE UVRABC COMPONENT UVRB A 657 [bacillus] caldotenax Gene Name(s): uvrB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.335
  • R-Value Work: 0.262
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 153.44 α = 90.00
b = 153.44 β = 90.00
c = 80.74 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-30
  • Released Date: 2000-05-03
  • Deposition author(s): Theis, K., Chen, P.J., Skorvaga, M., Van Houten, B., Kisker, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4