1D9E

STRUCTURE OF E. COLI KDO8P SYNTHASE

Structural Biology Knowledgebase: 1D9E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1D9E

Classification: LYASE

Total Structure Weight: 124444.16

Macromolecule Entities
Molecule Chains Length Organism Details
3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE SYNTHASE A, B, C, D 284 Escherichia coli EC#: 2.5.1.55 IUBMB
Gene Name(s): kdsA b1215 JW1206
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.199
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 228.62 α = 90.00
b = 228.62 β = 90.00
c = 228.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-27
  • Released Date: 2000-05-10
  • Deposition author(s): Radaev, S., Dastidar, P., Patel, M., Woodard, R.W., Gatti, D.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4