1D8H

X-RAY CRYSTAL STRUCTURE OF YEAST RNA TRIPHOSPHATASE IN COMPLEX WITH SULFATE AND MANGANESE IONS.

Structural Biology Knowledgebase: 1D8H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 1D8H

Classification: HYDROLASE

Total Structure Weight: 107528.41

Macromolecule Entities
Molecule Chains Length Organism Details
mRNA TRIPHOSPHATASE CET1 A, B, C 311 Saccharomyces cerevisiae EC#: 3.1.3.33 IUBMB
Mutation: K242R
Gene Name(s): CET1 YPL228W P1433
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.229
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 116.44 α = 90.00
b = 118.72 β = 108.06
c = 85.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-24
  • Released Date: 1999-11-29
  • Deposition author(s): Lima, C.D., Wang, L.K., Shuman, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values