1D8C

MALATE SYNTHASE G COMPLEXED WITH MAGNESIUM AND GLYOXYLATE

Structural Biology Knowledgebase: 1D8C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.175

Literature

Macromolecules
Sequence Display for 1D8C

Classification: LYASE

Total Structure Weight: 82405.55

Macromolecule Entities
Molecule Chains Length Organism Details
MALATE SYNTHASE G A 723 Escherichia coli EC#: 2.3.3.9 IUBMB
Mutation: S2A, M122M, M154M, M294M, M302M, M344M, M366M, M393M, M412M, M415M, M422M, M425M, M461M, M465M, M470M, M476M, M508M, M511M, M515M, M518M, M629M, M663M, M680M
Details: C-terminal his-tag (724-731)
Gene Name(s): glcB glc b2976 JW2943
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SOR
Query on SOR

A D-SORBITOL
C6 H14 O6
FBPFZTCFMRRESA-JGWLITMVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLV
Query on GLV

A GLYOXYLIC ACID
GLYOXALATE, GLYOXYLATE (Synonym)
C2 H2 O3
HHLFWLYXYJOTON-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.175
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.80 α = 90.00
b = 88.70 β = 90.00
c = 109.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-22
  • Released Date: 1999-11-10
  • Deposition author(s): Howard, B.R., Endrizzi, J.A., Remington, S.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4