1D7J

FKBP COMPLEXED WITH 4-HYDROXY-2-BUTANONE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 1D7J

Classification: ISOMERASE

Total Structure Weight: 24077.43

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (FK506-BINDING PROTEIN) A, B 107 Homo sapiens EC#: 5.2.1.8 IUBMB
Gene Name(s): FKBP1A Gene View FKBP1 FKBP12
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BUQ
Query on BUQ

A, B 4-HYDROXY-2-BUTANONE
C4 H8 O2
LVSQXDHWDCMMRJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NH4
Query on NH4

A, B AMMONIUM ION
H4 N
QGZKDVFQNNGYKY-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BUQ N/A in BindingDB
Kd: 500000 nM  BindingMOAD
Kd: 500000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.191
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 102.80 α = 90.00
b = 36.45 β = 96.00
c = 56.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-18
  • Released Date: 1999-10-21
  • Deposition author(s): Burkhard, P., Taylor, P., Walkinshaw, M.D.

Revision History

  • Version 1_0: 1999-10-21

    Type: Initial release

  • Version 1_1: 2007-10-16

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance

  • Version 1_3: 2017-10-04

    Type: Derived calculations, Refinement description