1D61

THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: MONOCLINIC FORM

Structural Biology Knowledgebase: 1D61 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Observed: 0.152

Literature

Macromolecules
Sequence Display for 1D61

Classification: DNA

Total Structure Weight: 3207.08

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3') A 10 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CAC
Query on CAC

A CACODYLATE ION
dimethylarsinate (Synonym)
C2 H6 As O2
OGGXGZAMXPVRFZ-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Observed: 0.152
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 31.87 α = 90.00
b = 25.69 β = 114.10
c = 34.21 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1992-02-26
  • Released Date: 1993-04-15
  • Deposition author(s): Lipanov, A., Kopka, M.L., Kaczor-Grzeskowiak, M., Quintana, J., Dickerson, R.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag nonstandard coordinate frame | Details: Tagged nonstandard coordinate frame