1D4J

HIV-1 protease in complex with the inhibitor MSL370

Structural Biology Knowledgebase: 1D4J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1D4J

Classification: HYDROLASE

Total Structure Weight: 22270.84

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 PROTEASE A, B 99 Human immunodeficiency virus EC#: 3.4.23.16 IUBMB
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MSC
Query on MSC

B 2,5-DIBENZYLOXY-3,4-DIHYDROXY-HEXANEDIOIC ACID 2- CHLORO-6-FLUORO-BENZYLAMIDE (2-HYDROXY-INDAN- 1- YL)-AMIDE
INHIBITOR MSL370 (Synonym)
C36 H36 Cl F N2 O7
BVPTXJDSYPTXMO-VQEIZDKSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MSC Ki: 4.4 nM (98) BindingDB

Ki: 4.4 nM  BindingMOAD
Ki: 4.40 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.199
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.78 α = 90.00
b = 86.52 β = 90.00
c = 46.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-04
  • Released Date: 2002-06-26
  • Deposition author(s): Unge, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4