1D4F

CRYSTAL STRUCTURE OF RECOMBINANT RAT-LIVER D244E MUTANT S-ADENOSYLHOMOCYSTEINE HYDROLASE

Structural Biology Knowledgebase: 1D4F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 1D4F

Classification: HYDROLASE

Total Structure Weight: 193643.47

Macromolecule Entities
Molecule Chains Length Organism Details
S-ADENOSYLHOMOCYSTEINE HYDROLASE A, B, C, D 431 Rattus norvegicus EC#: 3.3.1.1 IUBMB
Mutation: D244E
Gene Name(s): Ahcy
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, C, D NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADN
Query on ADN

A, B, C, D ADENOSINE
C10 H13 N5 O4
OIRDTQYFTABQOQ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.197
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 91.00 α = 90.00
b = 223.00 β = 90.00
c = 91.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-22
  • Released Date: 2001-01-17
  • Deposition author(s): Komoto, J., Huang, Y., Takusagawa, F., Gomi, T., Ogawa, H., Takata, Y., Fujioka, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4