1D3B

CRYSTAL STRUCTURE OF THE D3B SUBCOMPLEX OF THE HUMAN CORE SNRNP DOMAIN AT 2.0A RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 1D3B

Classification: RNA BINDING PROTEIN

Total Structure Weight: 115644.71

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3) A, C, E..., G, I, KA, C, E, G, I, K 75 Homo sapiens Fragment: SM MOTIF
Mutation: S66C
Gene Name(s): SNRPD3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) B, D, F..., H, J, LB, D, F, H, J, L 91 Homo sapiens Fragment: SM MOTIF
Gene Name(s): SNRPB Gene View COD SNRPB1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

B, G, I CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C, D, E, F, G, H, I, L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.213
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 107.35 α = 90.00
b = 108.45 β = 90.00
c = 110.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-12-22
  • Released Date: 1999-12-22
  • Deposition author(s): Kambach, C., Walke, S., Avis, J.M., De La Fortelle, E., Li, J., Nagai, K.

Revision History

  • 2008-04-01
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance
  • 2011-12-07
    Type: Database references