1D14

STRUCTURE OF 11-DEOXYDAUNOMYCIN BOUND TO DNA CONTAINING A PHOSPHOROTHIOATE

Structural Biology Knowledgebase: 1D14 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.224

Literature

Macromolecules
Sequence Display for 1D14

Classification: DNA

Total Structure Weight: 2336.82

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*TP*(AS)P*CP*G)-3') A 6 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DM3
Query on DM3

A 6-DEOXYDAUNOMYCIN
C27 H29 N O9
ZCLQMQOBRBUQOR-GRRPPOEGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
AS
Query on AS
A DNA LINKING C10 H14 N5 O5 P S DA

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.224
  • Space Group: P 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 17.73 α = 90.00
b = 19.13 β = 98.01
c = 26.36 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1989-10-20
  • Released Date: 1990-10-15
  • Deposition author(s): Williams, L.D., Egli, M., Ughetto, G., Van Der Marel, G.A., Van Boom, J.H., Quigley, G.J., Wang, A.H.-J., Rich, A., Frederick, C.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4