1CVX

CRYSTAL STRUCTURE OF POLYAMIDE DIMER (IMPYHPPYBETADP)2 BOUND TO B-DNA DECAMER CCAGATCTGG


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.237

Literature

Macromolecules
Sequence Display for 1CVX

Classification: DNA

Total Structure Weight: 7417.46

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*CP*AP*GP*AP*TP*CP*TP*GP*G)-3' A, B 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HP2
Query on HP2

A, B HYDROXYPYRROLE-IMIDAZOLE-PYRROLE POLYAMIDE
IMIDAZOLE-PYRROLE-HYDROXYPYRROLE-PYRROLE- BETA ALANINE-DIMETHYLAMINO PROPYLAMIDE (Synonym)
C31 H41 N11 O6
WNWMZSNXDXZKBO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
HP2 N/A in BindingDB
N/A in BindingMoad
Kd: 11000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.237
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 34.20 α = 90.00
b = 34.20 β = 90.00
c = 46.10 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-08-24
  • Released Date: 2000-01-15
  • Deposition author(s): Kielkopf, C.L., Bremer, R.E., White, S., Baird, E.E., Dervan, P.B., Rees, D.C.

Revision History

  • Version 1_0: 2000-01-15

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance