1CP6

1-BUTANEBORONIC ACID BINDING TO AEROMONAS PROTEOLYTICA AMINOPEPTIDASE

Structural Biology Knowledgebase: 1CP6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1CP6

Classification: HYDROLASE

Total Structure Weight: 31660.31

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (AMINOPEPTIDASE) A 291 Vibrio proteolyticus EC#: 3.4.11.10 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BUB
Query on BUB

A 1-BUTANE BORONIC ACID
C4 H11 B O2
QPKFVRWIISEVCW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BUB N/A in BindingDB
Ki: 10000 nM  BindingMOAD
Ki: 10000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.193
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 109.20 α = 90.00
b = 109.20 β = 90.00
c = 97.70 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-06-08
  • Released Date: 1999-06-17
  • Deposition author(s): Depaola, C.C., Bennett, B., Holz, R.C., Ringe, D., Petsko, G.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4