1CLU

H-RAS COMPLEXED WITH DIAMINOBENZOPHENONE-BETA,GAMMA-IMIDO-GTP

Structural Biology Knowledgebase: 1CLU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 1CLU

Classification: HYDROLASE

Total Structure Weight: 19656.13

Macromolecule Entities
Molecule Chains Length Organism Details
TRANSFORMING PROTEIN P21/H-RAS-1 A 166 Homo sapiens Fragment: CATALYTIC DOMAIN, RESIDUES 1 - 166
Mutation: G12P
Gene Name(s): HRAS Gene View HRAS1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DBG
Query on DBG

A 3-AMINOBENZOPHENONE-4-YL-AMINOHYDROXYPHOSPHINYLAMINOPHOSPHONIC ACID- GUANYLATE ESTER
DABP-GPPNHP (Synonym)
C23 H27 N8 O13 P3
MXYGEAAJPIMEHV-CIVUBGFFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DBG N/A in BindingDB
Kd: 5.4 nM  BindingMOAD
Kd: 5.4 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.203
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.20 α = 90.00
b = 40.20 β = 90.00
c = 161.97 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-05-03
  • Released Date: 1999-05-28
  • Deposition author(s): Ahmadian, M.R., Zor, T., Vogt, D., Kabsch, W., Selinger, Z., Wittinghofer, A., Scheffzek, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4