1CJ0

CRYSTAL STRUCTURE OF RABBIT CYTOSOLIC SERINE HYDROXYMETHYLTRANSFERASE AT 2.8 ANGSTROM RESOLUTION

Structural Biology Knowledgebase: 1CJ0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 1CJ0

Classification: TRANSFERASE

Total Structure Weight: 103908.91

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (SERINE HYDROXYMETHYLTRANSFERASE) A, B 470 Oryctolagus cuniculus EC#: 2.1.2.1 IUBMB
Details: EACH PROTEIN MOLECULE HAS COVALENTLY LINKED PLP COFACTOR
Gene Name(s): SHMT1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.214
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 116.38 α = 90.00
b = 116.38 β = 90.00
c = 165.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-04-20
  • Released Date: 1999-05-06
  • Deposition author(s): Scarsdale, J.N., Kazanina, G., Radaev, S., Schirch, V., Wright, H.T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update