1CEB

THE STRUCTURE OF THE NON-COVALENT COMPLEX OF RECOMBINANT KRINGLE 1 DOMAIN OF HUMAN PLASMINOGEN WITH AMCHA (TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Observed: 0.178

Literature

Macromolecules
Sequence Display for 1CEB

Classification: SERINE PROTEASE

Total Structure Weight: 20646.75

Macromolecule Entities
Molecule Chains Length Organism Details
PLASMINOGEN A, B 88 Homo sapiens EC#: 3.4.21.7 IUBMB
Fragment: KRINGLE 1
Gene Name(s): PLG Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMH
Query on AMH

A, B TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID
C8 H15 N O2
GYDJEQRTZSCIOI-LJGSYFOKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AMH IC50: 3100 - 2000000 nM (100) BindingDB
Kd: 1100 - 750000 nM (100) BindingDB

Ki: 1000 nM  BindingMOAD
Kd: 1000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Observed: 0.178
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 64.30 α = 90.00
b = 51.70 β = 90.00
c = 46.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-12-03
  • Released Date: 1996-04-03
  • Deposition author(s): Tulinsky, A., Mathews, I.I.

Revision History

  • 2008-03-24
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance