1CE6

MHC CLASS I H-2DB COMPLEXED WITH A SENDAI VIRUS NUCLEOPROTEIN PEPTIDE

Structural Biology Knowledgebase: 1CE6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 1CE6

Classification: MHC CLASS I

Total Structure Weight: 45762.39

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (MHC CLASS I H-2DB HEAVY CHAIN) A 274 Mus musculus Fragment: FRAGMENT: EXTRACELLULAR DOMAINS
Gene Name(s): H2-D1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (HUMAN BETA-2 MICROGLOBULIN) B 108 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (SENDAI VIRUS NUCLEOPROTEIN) C 9 Sendai virus Fragment: FRAGMENT: RESIDUES 324-332
Gene Name(s): N NP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.217
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 60.79 α = 90.00
b = 58.08 β = 108.26
c = 74.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-03-17
  • Released Date: 1999-03-26
  • Deposition author(s): Tormo, J., Jones, E.Y.

Revision History

  • 2011-12-07
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4