1CDE

STRUCTURES OF APO AND COMPLEXED ESCHERICHIA COLI GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE

Structural Biology Knowledgebase: 1CDE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Observed: 0.250

Literature

Macromolecules
Sequence Display for 1CDE

Classification: TRANSFERASE(FORMYL)

Total Structure Weight: 95964.04

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHORIBOSYL-GLYCINAMIDE FORMYLTRANSFERASE A, B, C, D 212 Escherichia coli EC#: 2.1.2.2 IUBMB
Gene Name(s): purN b2500 JW2485
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DZF
Query on DZF

A, B, C, D 5-DEAZAFOLIC ACID
C20 H20 N6 O6
NFARHPAOOHOWAL-AWEZNQCLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAR
Query on GAR

A, B, C, D GLYCINAMIDE RIBONUCLEOTIDE
C7 H13 N2 O8 P
OBQMLSFOUZUIOB-SHUUEZRQSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Observed: 0.250
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 76.70 α = 111.50
b = 72.60 β = 82.80
c = 57.00 γ = 62.60

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1992-05-15
  • Released Date: 1993-10-31
  • Deposition author(s): Almassy, R.J., Janson, C.A., Kan, C.-C., Hostomska, Z.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4