1CCZ

CRYSTAL STRUCTURE OF THE CD2-BINDING DOMAIN OF CD58 (LYMPHOCYTE FUNCTION-ASSOCIATED ANTIGEN 3) AT 1.8-A RESOLUTION

Structural Biology Knowledgebase: 1CCZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 1CCZ

Classification: GLYCOPROTEIN

Total Structure Weight: 20601.39

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (CD58) A 171 Homo sapiens Fragment: CD2-BINDING DOMAIN
Gene Name(s): CD58 Gene View LFA3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.202
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 116.43 α = 90.00
b = 116.43 β = 90.00
c = 51.52 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-03-02
  • Released Date: 1999-04-05
  • Deposition author(s): Ikemizu, S., Sparks, L.M., Van Der Merwe, P.A., Harlos, K., Stuart, D.I., Jones, E.Y., Davis, S.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update