1C5C

DECARBOXYLASE CATALYTIC ANTIBODY 21D8-HAPTEN COMPLEX

Structural Biology Knowledgebase: 1C5C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.61 Å
  • R-Value Observed: 0.193

Literature

Macromolecules
Sequence Display for 1C5C

Classification: IMMUNE SYSTEM

Total Structure Weight: 47050.78

Macromolecule Entities
Molecule Chains Length Organism Details
CHIMERIC DECARBOXYLASE ANTIBODY 21D8 L 214 Homo sapiens Mus musculus Fragment: FAB
Details: THE CONSTANT DOMAIN (RESIDUES 103-214) IS FROM HUMAN SOURCE, AND THE VARIABLE DOMAIN (RESIDUES 1-102) IS FROM MURINE SOURCE
CHIMERIC DECARBOXYLASE ANTIBODY 21D8 H 215 Homo sapiens Mus musculus Fragment: FAB
Details: THE CONSTANT DOMAIN (RESIDUES 109-230) IS FROM HUMAN SOURCE, AND THE VARIABLE DOMAIN (RESIDUES 1-108) IS FROM MURINE SOURCE

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TK4
Query on TK4

L 2-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID
C12 H11 N O7 S2
WGOQGHNONXFNJQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TK4 N/A in BindingDB
Kd: 110 nM  BindingMOAD
Kd: 110 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.61 Å
  • R-Value Observed: 0.193
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 39.22 α = 90.00
b = 43.93 β = 90.00
c = 221.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-11-09
  • Released Date: 2000-10-11
  • Deposition author(s): Hotta, K., Wilson, I.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values