1C53

S-CLASS CYTOCHROMES C HAVE A VARIETY OF FOLDING PATTERNS: STRUCTURE OF CYTOCHROME C-553 FROM DESULFOVIBRIO VULGARIS DETERMINED BY THE MULTI-WAVELENGTH ANOMALOUS DISPERSION METHOD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.194

Literature

Macromolecules
Sequence Display for 1C53

Classification: ELECTRON TRANSPORT

Total Structure Weight: 9028.16

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOCHROME C553 A 79 Desulfovibrio vulgaris Gene Name(s): DvMF_0538
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.194
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 42.70 α = 90.00
b = 42.70 β = 90.00
c = 103.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1991-08-26
  • Released Date: 1993-10-31
  • Deposition author(s): Nakagawa, A., Higuchi, Y., Yasuoka, N., Katsube, Y., Yaga, T.

Revision History

  • Version 1_0: 1993-10-31

    Type: Initial release

  • Version 1_1: 2008-03-24

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance