1C12

INSIGHT IN ODORANT PERCEPTION: THE CRYSTAL STRUCTURE AND BINDING CHARACTERISTICS OF ANTIBODY FRAGMENTS DIRECTED AGAINST THE MUSK ODORANT TRASEOLIDE

Structural Biology Knowledgebase: 1C12 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1C12

Classification: IMMUNE SYSTEM

Total Structure Weight: 47550.16

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (ANTIBODY FRAGMENT FAB) A 214 Mus musculus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (ANTIBODY FRAGMENT FAB) B 220 Mus musculus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRZ
Query on TRZ

A TRAZEOLIDE
C20 H28 O3
YUTXECPABXNXPU-DJJJIMSYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TRZ N/A in BindingDB
N/A in BindingMoad
Kd: 1.9 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.205
  • Space Group: P 2 21 21

Unit Cell:

Length (Å) Angle (°)
a = 40.40 α = 90.00
b = 84.10 β = 90.00
c = 134.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-07-20
  • Released Date: 1999-08-14
  • Deposition author(s): Langedijk, A.C., Spinelli, S., Anguille, C., Hermans, P., Nederlof, J., Butenandt, J., Honegger, A., Cambillau, C., Pluckthun, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4