1C0Q

COMPLEX OF VANCOMYCIN WITH 2-ACETOXY-D-PROPANOIC ACID

Structural Biology Knowledgebase: 1C0Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.139
  • R-Value Work: 0.119

Literature

Macromolecules
Sequence Display for 1C0Q

Classification: ANTIBIOTIC

Total Structure Weight: 3143.10

Macromolecule Entities
Molecule Chains Length Organism Details
VANCOMYCIN A, B 7 Amycolatopsis orientalis

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BGC
Query on BGC

A, B BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RER
Query on RER

A, B (1R,3S,4S,5S)-3-amino-2,3,6-trideoxy-3-methyl- alpha-L-arabino-hexopyranose
VANCOSAMINE (Synonym)
C7 H15 N O3
OIJZDPGKNVKVBL-WNJXEPBRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LAC
Query on LAC

B LACTIC ACID
C3 H6 O3
JVTAAEKCZFNVCJ-UWTATZPHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000204
Query on PRD_000204
A, B VANCOMYCIN Glycopeptide /
Antibiotic
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.139
  • R-Value Work: 0.119
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 28.40 α = 90.00
b = 28.40 β = 90.00
c = 65.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-07-20
  • Released Date: 1999-07-30
  • Deposition author(s): Loll, P.J., Kaplan, J., Selinsky, B., Axelsen, P.H.

Revision History

  • 2013-04-10
    Type: Binding sites and description | Details: --
  • 2013-03-27
    Type: Polymer description | Details: --
  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-27
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-27
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-27
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-27
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-27
    Type: Linkage | Details: Linkage
  • 2011-07-27
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-27
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4