1C0P

D-AMINO ACIC OXIDASE IN COMPLEX WITH D-ALANINE AND A PARTIALLY OCCUPIED BIATOMIC SPECIES

Structural Biology Knowledgebase: 1C0P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Observed: 0.116

Literature

Macromolecules
Sequence Display for 1C0P

Classification: OXIDOREDUCTASE

Total Structure Weight: 40614.02

Macromolecule Entities
Molecule Chains Length Organism Details
D-AMINO ACID OXIDASE A 363 Rhodotorula toruloides EC#: 1.4.3.3 IUBMB
Gene Name(s): DAO1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DAL
Query on DAL

A D-ALANINE
C3 H7 N O2
QNAYBMKLOCPYGJ-UWTATZPHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PER
Query on PER

A PEROXIDE ION
O2
ANAIPYUSIMHBEL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Observed: 0.116
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 120.89 α = 90.00
b = 120.89 β = 90.00
c = 136.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-07-19
  • Released Date: 2000-11-22
  • Deposition author(s): Umhau, S., Pollegioni, L., Molla, G., Diederichs, K., Welte, W., Pilone, S.M., Ghisla, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update