1C0O

SOLUTION STRUCTURE OF THE P5 HAIRPIN FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NMR, 19 CONVERGED STRUCTURES

Structural Biology Knowledgebase: 1C0O SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 40
  • Conformers Submitted: 19
  • Selection Criteria: Noe Energy (least Restraint Violations) Dihedral Energy (least Restraint Violations) Total Energy

Literature

Macromolecules
Sequence Display for 1C0O

Classification: RNA

Total Structure Weight: 4632.81

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*GP*GP*GP*UP*CP*UP*UP*CP*GP*GP*GP*UP*CP*C)-3') A 14 Tetrahymena thermophila CLOSED BY A UUCG TETRALOOP; COBALT (III) HEXAMMINE BINDS AT THE MAJOR GROOVE OF TWO TANDEM G-U WOBBLE PAIRS IN 5'-GU-3' ORIENTATION

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NCO
Query on NCO

A COBALT HEXAMMINE(III)
Co H18 N6
DYLMFCCYOUSRTK-FGTKAUEHAT
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 40
  • Conformers Submitted: 19
  • Selection Criteria: NOE ENERGY (LEAST RESTRAINT VIOLATIONS), DIHEDRAL ENERGY (LEAST RESTRAINT VIOLATIONS), TOTAL ENERGY

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1999-03-16
  • Released Date: 1999-08-31
  • Deposition author(s): Colmenarejo, G., Tinoco Jr., I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4