1C0L

D-AMINO ACID OXIDASE: STRUCTURE OF SUBSTRATE COMPLEXES AT VERY HIGH RESOLUTION REVEAL THE CHEMICAL REACTTION MECHANISM OF FLAVIN DEHYDROGENATION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Observed: 0.162

Literature

Macromolecules
Sequence Display for 1C0L

Classification: OXIDOREDUCTASE

Total Structure Weight: 40543.54

Macromolecule Entities
Molecule Chains Length Organism Details
D-AMINO ACID OXIDASE A 363 Rhodotorula toruloides EC#: 1.4.3.3 IUBMB
Gene Name(s): DAO1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FLA
Query on FLA

A TRIFLUOROALANINE
C3 H4 F3 N O2
HMJQKIDUCWWIBW-SFOWXEAESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FLA N/A in BindingDB
Kd: 6200000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Observed: 0.162
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 120.36 α = 90.00
b = 120.36 β = 90.00
c = 136.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-07-16
  • Released Date: 2000-11-22
  • Deposition author(s): Umhau, S., Molla, G., Diederichs, K., Pilone, M.S., Ghisla, S., Welte, W.

Revision History

  • Version 1_0: 2000-11-22

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-04

    Type: Refinement description