1BYU

CANINE GDP-RAN

Structural Biology Knowledgebase: 1BYU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 1BYU

Classification: TRANSPORT PROTEIN

Total Structure Weight: 49899.68

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (GTP-BINDING PROTEIN RAN) A, B 216 Canis lupus EC#: 2.1.1.64 IUBMB
Fragment: ALL
Gene Name(s): RAN Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A, B GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.176
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 60.79 α = 90.00
b = 60.43 β = 101.67
c = 61.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-10-18
  • Released Date: 1998-12-02
  • Deposition author(s): Stewart, M., Kent, H.M., Mccoy, A.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4