1BXH

CONCANAVALIN A COMPLEXED TO METHYL ALPHA1-2 MANNOBIOSIDE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1BXH

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 104034.70

Macromolecule Entities
Molecule Chains Length Organism Details
Concanavalin-A A, B, C, D 237 Canavalia ensiformis Fragment: UNP P02866 residues 164-281, 30-148
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMG
Query on AMG

A, D ALPHA-METHYL-D-GALACTOSIDE
C7 H14 O6
HOVAGTYPODGVJG-PZRMXXKTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MMA
Query on MMA

A, B, C O1-METHYL-MANNOSE
C7 H14 O6
HOVAGTYPODGVJG-VEIUFWFVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C, D MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MMA IC50: 350000 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.196
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 119.70 α = 90.00
b = 119.70 β = 90.00
c = 68.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-10-02
  • Released Date: 1998-10-07
  • Deposition author(s): Moothoo, D.N., Canaan, B., Field, R.A., Naismith, J.H.

Revision History

  • Version 1_0: 1998-10-07

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-06-28

    Type: Advisory, Database references, Refinement description, Source and taxonomy, Structure summary