1BW9

PHENYLALANINE DEHYDROGENASE STRUCTURE IN TERNARY COMPLEX WITH NAD+ AND PHENYLPYRUVATE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1BW9

Classification: AMINO ACID DEHYDROGENASE

Total Structure Weight: 75476.66

Macromolecule Entities
Molecule Chains Length Organism Details
PHENYLALANINE DEHYDROGENASE A 356 Rhodococcus sp. EC#: 1.4.1.20 IUBMB
Mutation: R19S, E20M, Q48N
Gene Name(s): pdh
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PHENYLALANINE DEHYDROGENASE B 356 Rhodococcus sp. EC#: 1.4.1.20 IUBMB
Mutation: R419K, E420M
Gene Name(s): pdh

Small Molecules
Ligands 7 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PPY
Query on PPY

A, B 3-PHENYLPYRUVIC ACID
C9 H8 O3
BTNMPGBKDVTSJY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

B ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

B POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed:
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 64.30 α = 90.00
b = 110.20 β = 90.00
c = 113.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-10-01
  • Released Date: 1999-05-18
  • Deposition author(s): Vanhooke, J.L., Thoden, J.B., Brunhuber, N.M.W., Blanchard, J.L., Holden, H.M.

Revision History

  • Version 1_0: 1999-05-18

    Type: Initial release

  • Version 1_1: 2008-03-25

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance