1BVE

HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR, 28 STRUCTURES

Structural Biology Knowledgebase: 1BVE SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 28
  • Conformers Submitted: 28
  • Selection Criteria:

Literature

Macromolecules
Sequence Display for 1BVE

Classification: ASPARTYL PROTEASE

Total Structure Weight: 22082.22

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 PROTEASE A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Mutation: C95A
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DMP
Query on DMP

B [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO- 5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL- PHENYL]METHYL)-4,7-BIS(PHENYLMETHYL)]-2H- 1,3-DIAZEPINONE
DMP323(INHIBITOR OF DUPONT MERCK) (Synonym)
C35 H38 N2 O5
XCVGQMUMMDXKCY-WZJLIZBTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DMP IC50: 15 - 110 nM (96 - 98) BindingDB
Kd: 3.83 nM (98) BindingDB
Ki: 0.27 - <1 nM (86 - 98) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 28
  • Conformers Submitted: 28
  • Selection Criteria: --

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-01-16
  • Released Date: 1996-08-17
  • Deposition author(s): Yamazaki, T., Hinck, A.P., Wang, Y.-X., Nicholson, L.K., Torchia, D.A., Wingfield, P., Stahl, S.J., Kaufman, J.D., Chang, C., Domaille, P.J., Lam, P.Y.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4