1BQH

MURINE CD8AA ECTODOMAIN FRAGMENT IN COMPLEX WITH H-2KB/VSV8


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 1BQH

Classification: IMMUNE SYSTEM

Total Structure Weight: 147554.08

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN) A, D 274 Mus musculus Fragment: ALPHA CHAIN
Gene Name(s): H2-K1 H2-K
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (BETA-2-MICROGLOBULIN ) B, E 99 Mus musculus Fragment: BETA CHAIN
Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (VSV8) C, F 8 synthetic Fragment: ANTIGENIC PEPTIDE
PROTEIN (CD8A OR LYT2 OR LYT-2) G, H, I, K 129 Mus musculus Fragment: IG ECTODOMAIN FRAGMENT
Mutation: N123S, T125A, T126D, T127L, K128V
Gene Name(s): Cd8a Lyt-2 Lyt2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

H, I, K N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NDG
Query on NDG

G 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.212
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 85.90 α = 90.00
b = 98.40 β = 90.00
c = 170.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-08-16
  • Released Date: 1998-08-19
  • Deposition author(s): Wang, J.H., Reinherz, E.L., Kern, P.S., Chang, H.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update