1BL4

FKBP MUTANT F36V COMPLEXED WITH REMODELED SYNTHETIC LIGAND

Structural Biology Knowledgebase: 1BL4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1BL4

Classification: ISOMERASE

Total Structure Weight: 24964.71

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (FK506 BINDING PROTEIN) A, B 107 Homo sapiens EC#: 5.2.1.8 IUBMB
Mutation: F36V
Details: COMPLEXED WITH REDESIGNED COMPOUND
Gene Name(s): FKBP1A Gene View FKBP1 FKBP12
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AP1
Query on AP1

A, B {3-[3-(3,4-DIMETHOXY-PHENYL)-1-(1-{1-[2-(3,4,5- TRIMETHOXY-PHENYL)-BUTYRYL]-PIPERIDIN-2YL}- VINYLOXY)-PROPYL]-PHENOXY}-ACETIC ACID
C38 H47 N O11
XCCRAOPQCACRFC-OIFRRMEBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AP1 IC50: 1.8 - 8.2 nM (99) BindingDB

IC50: 1.8 nM  BindingMOAD
IC50: 1.8 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.188
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 32.73 α = 62.61
b = 41.85 β = 82.75
c = 43.59 γ = 85.29

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-07-23
  • Released Date: 1998-09-02
  • Deposition author(s): Hatada, M.H., Clackson, T., Yang, W., Rozamus, L.W., Amara, J., Rollins, C.T., Stevenson, L.F., Magari, S.R., Wood, S.A., Courage, N.L., Lu, X., Cerasoli Junior, F., Gilman, M., Holt, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4