1BKC

CATALYTIC DOMAIN OF TNF-ALPHA CONVERTING ENZYME (TACE)

Structural Biology Knowledgebase: 1BKC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 1BKC

Classification: ZN-ENDOPEPTIDASE

Total Structure Weight: 117772.29

Macromolecule Entities
Molecule Chains Length Organism Details
TUMOR NECROSIS FACTOR-ALPHA-CONVERTING ENZYME A, C 256 Homo sapiens EC#: 3.4.24.86 IUBMB
Mutation: S266A, N452Q
Gene Name(s): ADAM17 Gene View CSVP TACE
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
TUMOR NECROSIS FACTOR-ALPHA-CONVERTING ENZYME E 256 Homo sapiens EC#: 3.4.24.86 IUBMB
Mutation: S266A, L420K, N452Q
Gene Name(s): ADAM17 Gene View CSVP TACE
TUMOR NECROSIS FACTOR-ALPHA-CONVERTING ENZYME I 256 Homo sapiens EC#: 3.4.24.86 IUBMB
Mutation: S266A, D428E, N452Q
Gene Name(s): ADAM17 Gene View CSVP TACE

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
INN
Query on INN

A, C, E, I N-{(2R)-2-[2-(hydroxyamino)-2-oxoethyl]-4- methylpentanoyl}-3-methyl-L-valyl-N-(2-aminoethyl)- L-alaninamide
C19 H37 N5 O5
LMIQCBIEAHJAMZ-GZBFAFLISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, C, E, I ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.180
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 61.38 α = 90.00
b = 126.27 β = 107.41
c = 81.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-04-23
  • Released Date: 1999-06-22
  • Deposition author(s): Maskos, K., Fernandez-Catalan, C., Bode, W.

Revision History

  • 2013-02-27
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update