1BJ1

VASCULAR ENDOTHELIAL GROWTH FACTOR IN COMPLEX WITH A NEUTRALIZING ANTIBODY

Structural Biology Knowledgebase: 1BJ1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1BJ1

Classification: COMPLEX (ANTIBODY / ANTIGEN)

Total Structure Weight: 120815.71

Macromolecule Entities
Molecule Chains Length Organism Details
FAB FRAGMENT J, L 214 Mus musculus Mutation: T10S, R24S, S28D, P31N, W32Y, P34N, L46V, K50F, A51T, E55H, E70D, T76S, D81E, F87Y, H90Q, N93T, R94V
Details: HUMANIZED VERSION OF A MONOCLONAL MURINE ANTI-VEGF ANTIBODY
FAB FRAGMENT H, K 231 Mus musculus Details: HUMANIZED VERSION OF A MONOCLONAL MURINE ANTI-VEGF ANTIBODY
VASCULAR ENDOTHELIAL GROWTH FACTOR V, W 102 Homo sapiens Fragment: RECEPTOR BINDING DOMAIN
Gene Name(s): VEGFA Gene View VEGF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

H, K SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.196
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 89.86 α = 90.00
b = 66.98 β = 94.27
c = 140.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-06-30
  • Released Date: 1999-01-13
  • Deposition author(s): Muller, Y.A., Christinger, H.W., De Vos, A.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4